Variant report

Variant	rs4713724
Chromosome Location	chr6:33893934-33893935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
2	chr6:33889301..33891295-chr6:33893336..33896618,3	MCF-7	breast:
3	chr6:33893477..33895597-chr6:33913163..33915930,2	K562	blood:
4	chr6:33892310..33894285-chr6:33898684..33900893,3	K562	blood:
5	chr6:33885575..33887845-chr6:33891756..33894139,2	MCF-7	breast:
6	chr6:33893792..33896419-chr6:33908700..33911683,2	K562	blood:
7	chr6:33892310..33894351-chr6:33897735..33900618,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-1	chr6:33892111-33895408	ENSG00000233183

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16869745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274155	1.00[EUR][1000 genomes]
rs2477232	0.95[ASN][1000 genomes]
rs2477237	0.92[ASN][1000 genomes]
rs4711368	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57423367	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59880244	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs732673	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3409018	chr6:33890574-33894172	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33891800-33894000	Enhancers	Ovary	ovary
3	chr6:33892200-33895600	Enhancers	Brain Germinal Matrix	brain
4	chr6:33892400-33894200	Enhancers	Fetal Brain Male	brain
5	chr6:33893000-33894000	Enhancers	Lung	lung
6	chr6:33893000-33894400	Enhancers	Fetal Brain Female	brain
7	chr6:33893000-33895200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:33893200-33894000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:33893200-33897600	Weak transcription	Fetal Lung	lung
10	chr6:33893600-33895800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:33893800-33894000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:33893800-33894600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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