Variant report

Variant	rs16869926
Chromosome Location	chr8:103989661-103989662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr8:103989646-103989905	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103987503..103990254-chr8:104000739..104004845,3	MCF-7	breast:
2	chr8:103987556..103990076-chr8:103994687..103996398,2	K562	blood:

Variant related genes	Relation type
ENSG00000254281	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10086253	1.00[ASN][1000 genomes]
rs10092859	1.00[ASN][1000 genomes]
rs10113831	1.00[ASN][1000 genomes]
rs11775791	1.00[ASN][1000 genomes]
rs16869922	1.00[ASN][1000 genomes]
rs16869925	1.00[ASN][1000 genomes]
rs6468851	1.00[ASN][1000 genomes]
rs6468854	1.00[ASN][1000 genomes]
rs6468855	1.00[ASN][1000 genomes]
rs6468856	1.00[ASN][1000 genomes]
rs6984955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990190	1.00[ASN][1000 genomes]
rs7816287	1.00[ASN][1000 genomes]
rs7827768	1.00[ASN][1000 genomes]
rs7828471	1.00[ASN][1000 genomes]
rs7837635	1.00[ASN][1000 genomes]
rs7840911	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103981200-103992600	Weak transcription	Brain Substantia Nigra	brain
2	chr8:103988200-103991200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:103988400-103991200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:103989000-103990200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:103989000-103990400	Enhancers	Primary B cells from cord blood	blood
6	chr8:103989200-103989800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:103989200-103989800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:103989200-103990000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:103989200-103990000	Enhancers	Fetal Brain Male	brain
10	chr8:103989200-103990400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:103989200-103990600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:103989200-103990800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:103989200-103991000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:103989200-103991200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:103989400-103989800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:103989400-103990400	Enhancers	Placenta	Placenta
17	chr8:103989400-103990600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:103989600-103989800	Enhancers	Brain Hippocampus Middle	brain
19	chr8:103989600-103990000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:103989600-103990400	Enhancers	Fetal Muscle Leg	muscle
21	chr8:103989600-103990600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:103989600-103991400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links