Variant report

Variant	rs7828471
Chromosome Location	chr8:103980650-103980651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103874330..103878583-chr8:103978201..103983603,5	MCF-7	breast:
2	chr8:103874838..103876433-chr8:103978031..103981018,2	MCF-7	breast:
3	chr8:103979381..103981672-chr8:103986062..103989018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10086253	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092859	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113831	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775791	1.00[ASN][1000 genomes]
rs16869922	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869925	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869926	1.00[ASN][1000 genomes]
rs6468851	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468854	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468855	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468856	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984955	1.00[ASN][1000 genomes]
rs6990190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816287	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827768	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837635	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840911	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1803798	chr8:103974458-103987922	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103974400-103980800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:103974400-103989200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:103974400-103989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:103974800-103982200	Weak transcription	GM12878-XiMat	blood
5	chr8:103976200-103981400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:103977000-103989200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:103977200-103985200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:103977800-103981400	Enhancers	Fetal Lung	lung
9	chr8:103978600-103980800	Enhancers	Ovary	ovary
10	chr8:103979000-103982800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:103979400-103980800	Enhancers	Fetal Stomach	stomach
12	chr8:103979600-103981400	Enhancers	Brain Anterior Caudate	brain
13	chr8:103979600-103982400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:103979800-103981200	Enhancers	Fetal Muscle Leg	muscle
15	chr8:103980200-103981800	Weak transcription	Pancreas	Pancrea
16	chr8:103980200-103982000	Enhancers	Brain Hippocampus Middle	brain
17	chr8:103980400-103981200	Enhancers	Adipose Nuclei	Adipose
18	chr8:103980400-103981200	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:103980400-103981200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr8:103980400-103981200	Enhancers	Brain Substantia Nigra	brain
21	chr8:103980600-103981000	Enhancers	Brain Angular Gyrus	brain
22	chr8:103980600-103981000	Enhancers	Brain Germinal Matrix	brain
23	chr8:103980600-103981000	Enhancers	HepG2	liver
24	chr8:103980600-103981200	Enhancers	Fetal Brain Male	brain
25	chr8:103980600-103981200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:103980600-103981400	Enhancers	Liver	Liver
27	chr8:103980600-103981600	Enhancers	Fetal Brain Female	brain
28	chr8:103980600-103982400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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