Variant report

Variant	rs7837635
Chromosome Location	chr8:103975325-103975326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103874782..103876316-chr8:103973931..103975682,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10086253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092859	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775791	1.00[ASN][1000 genomes]
rs16869922	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869925	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869926	1.00[ASN][1000 genomes]
rs6468851	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468852	0.86[AFR][1000 genomes]
rs6468854	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468855	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468856	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984955	1.00[ASN][1000 genomes]
rs6990190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816287	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827768	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828471	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840373	0.81[AFR][1000 genomes]
rs7840911	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv465752	chr8:103953990-103979714	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv611823	chr8:103953990-103979714	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1803798	chr8:103974458-103987922	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103973600-103975400	Enhancers	Fetal Thymus	thymus
2	chr8:103974000-103978000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:103974200-103977600	Weak transcription	Adipose Nuclei	Adipose
4	chr8:103974200-103977800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:103974200-103977800	Weak transcription	Brain Anterior Caudate	brain
6	chr8:103974200-103979800	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:103974400-103976000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:103974400-103976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:103974400-103976000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:103974400-103976000	Weak transcription	Placenta	Placenta
11	chr8:103974400-103976000	Weak transcription	Ovary	ovary
12	chr8:103974400-103976000	Weak transcription	Pancreas	Pancrea
13	chr8:103974400-103976200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:103974400-103976400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:103974400-103977800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr8:103974400-103979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:103974400-103980400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:103974400-103980800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:103974400-103989200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:103974400-103989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:103974600-103976000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:103974800-103976000	Weak transcription	Fetal Kidney	kidney
23	chr8:103974800-103976000	Weak transcription	Thymus	Thymus
24	chr8:103974800-103976200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:103974800-103978600	Weak transcription	Right Atrium	heart
26	chr8:103974800-103982200	Weak transcription	GM12878-XiMat	blood
27	chr8:103975000-103980400	Weak transcription	Brain Cingulate Gyrus	brain

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