Variant report

Variant	rs16870052
Chromosome Location	chr8:104092898-104092899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1512348	0.85[YRI][hapmap]
rs16870020	0.87[YRI][hapmap];0.94[AFR][1000 genomes]
rs16870035	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs575524	0.87[YRI][hapmap]
rs582100	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv891247	chr8:104090979-104121862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104083600-104093000	Weak transcription	Placenta	Placenta
2	chr8:104087600-104093200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:104090400-104093000	Weak transcription	Gastric	stomach
4	chr8:104090400-104093000	Weak transcription	Lung	lung
5	chr8:104091400-104093200	Weak transcription	Spleen	Spleen
6	chr8:104091400-104094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:104091600-104094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:104092000-104093000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:104092000-104094400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:104092200-104093000	Weak transcription	Pancreas	Pancrea
11	chr8:104092200-104093200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:104092400-104121600	Weak transcription	Right Atrium	heart
13	chr8:104092800-104093400	Enhancers	Left Ventricle	heart
14	chr8:104092800-104093400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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