Variant report

Variant	rs575524
Chromosome Location	chr8:103998718-103998719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103993083..103995018-chr8:103998506..104000574,2	MCF-7	breast:
2	chr8:103989692..103992041-chr8:103996933..103998764,2	MCF-7	breast:
3	chr8:103996495..103999134-chr8:104007444..104009301,2	MCF-7	breast:
4	chr8:103983197..103984715-chr8:103998535..104001425,2	K562	blood:

Variant related genes	Relation type
ENSG00000254281	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10092124	0.82[JPT][hapmap]
rs10099603	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1512348	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1566158	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16869976	0.85[YRI][hapmap]
rs16869978	0.85[YRI][hapmap]
rs16870020	1.00[YRI][hapmap]
rs16870035	1.00[YRI][hapmap]
rs16870052	0.87[YRI][hapmap]
rs1849339	0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1913025	0.82[JPT][hapmap]
rs2047378	0.82[CEU][hapmap]
rs2048550	0.82[CEU][hapmap]
rs2458287	0.82[YRI][hapmap]
rs2515180	0.82[CEU][hapmap]
rs2515192	0.82[CEU][hapmap]
rs2515194	0.82[CEU][hapmap]
rs2679733	0.81[ASN][1000 genomes]
rs2679734	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2679738	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3018945	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4373497	0.82[JPT][hapmap]
rs493743	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs498193	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs514502	0.82[JPT][hapmap]
rs515024	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs525817	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55801214	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs565338	0.85[JPT][hapmap]
rs582100	0.85[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs600667	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs640903	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7013362	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs7816151	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834163	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs868907	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv824699	chr8:103993689-103998885	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611831	chr8:103995624-104002664	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:103994800-103999200	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:103995800-103999400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:103996000-104001400	Weak transcription	Primary B cells from cord blood	blood
6	chr8:103996400-104001400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:103996400-104001800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:103996400-104003200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:103996400-104003200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:103998400-103999200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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