Variant report

Variant	rs525817
Chromosome Location	chr8:103993578-103993579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103993083..103995018-chr8:103998506..104000574,2	MCF-7	breast:
2	chr8:103984545..103986132-chr8:103993005..103995689,2	MCF-7	breast:
3	chr8:103993356..103995449-chr8:103995905..103998523,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092124	0.87[JPT][hapmap]
rs10099603	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1512348	0.83[ASW][hapmap];0.85[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1566158	0.85[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1849339	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1913025	0.87[JPT][hapmap]
rs2047378	0.84[MEX][hapmap]
rs2515192	0.84[MEX][hapmap]
rs2515194	0.84[MEX][hapmap]
rs2679734	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2679738	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3018945	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3019163	0.83[MEX][hapmap]
rs4373497	0.87[JPT][hapmap]
rs493743	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs498193	0.80[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs514502	0.87[JPT][hapmap]
rs515024	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55801214	0.81[ASN][1000 genomes]
rs563544	0.82[JPT][hapmap]
rs565338	0.86[JPT][hapmap]
rs575524	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs582100	0.83[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs600667	0.89[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs640903	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs661012	0.86[JPT][hapmap]
rs7013362	0.81[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap]
rs7816151	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7834163	0.83[ASN][1000 genomes]
rs868907	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv3479710	chr8:103993376-103998574	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103991200-103995800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:103992000-103993600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:103992200-103993600	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr8:103992400-103993600	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:103992800-103995800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:103993200-103993800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:103993200-103995800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:103993400-103993600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:103993400-104012400	Weak transcription	Spleen	Spleen

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