Variant report

Variant	rs600667
Chromosome Location	chr8:104007013-104007014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103873743..103876435-chr8:104005600..104007711,2	MCF-7	breast:
2	chr8:104004392..104007373-chr8:104019814..104021377,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10092124	0.86[JPT][hapmap]
rs10099603	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1512348	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1566158	0.84[ASW][hapmap];0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1849339	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1913025	0.86[JPT][hapmap]
rs2047378	0.83[GIH][hapmap]
rs2515192	0.83[GIH][hapmap]
rs2515194	0.83[GIH][hapmap]
rs2679733	0.83[ASN][1000 genomes]
rs2679734	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2679738	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3018945	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3019163	0.82[GIH][hapmap]
rs4373497	0.86[JPT][hapmap]
rs493743	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs498193	0.80[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs514502	0.86[JPT][hapmap]
rs515024	0.92[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs525817	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55801214	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs563544	0.80[JPT][hapmap]
rs565338	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs575524	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs582100	0.82[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs640903	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661012	0.85[JPT][hapmap]
rs693341	0.82[ASN][1000 genomes]
rs7013362	0.92[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7816151	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834163	0.88[ASN][1000 genomes]
rs868907	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
4	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
5	chr8:104003200-104008000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr8:104004000-104010200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:104004200-104007400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:104004600-104007200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr8:104006600-104008600	Strong transcription	Primary B cells from cord blood	blood
10	chr8:104006600-104009000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:104006600-104009200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:104006800-104007200	Enhancers	NHDF-Ad	bronchial
13	chr8:104006800-104007600	Enhancers	Fetal Muscle Leg	muscle
14	chr8:104006800-104007600	Enhancers	Ovary	ovary
15	chr8:104006800-104009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:104006800-104009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:104006800-104012400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:104007000-104007200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:104007000-104007200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:104007000-104007200	Flanking Active TSS	HSMM	muscle
21	chr8:104007000-104007200	Enhancers	NHLF	lung
22	chr8:104007000-104007400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:104007000-104007400	Flanking Active TSS	HSMMtube	muscle
24	chr8:104007000-104007600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:104007000-104007600	Enhancers	Lung	lung
26	chr8:104007000-104007600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr8:104007000-104007600	Flanking Active TSS	Osteobl	bone
28	chr8:104007000-104008200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
29	chr8:104007000-104008600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr8:104007000-104008600	Enhancers	Skeletal Muscle Male	skeletal muscle

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