Variant report

Variant	rs55801214
Chromosome Location	chr8:104026265-104026266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103874211..103876733-chr8:104025431..104027243,2	MCF-7	breast:
2	chr8:104025781..104028424-chr8:104031631..104033498,3	MCF-7	breast:
3	chr8:104024663..104026547-chr8:104030749..104032308,2	MCF-7	breast:
4	chr8:104020093..104022947-chr8:104025466..104027135,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000253320	Chromatin interaction
ENSG00000155097	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10092124	0.84[ASN][1000 genomes]
rs10099603	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10955300	0.84[ASN][1000 genomes]
rs11775864	0.81[ASN][1000 genomes]
rs11777066	0.82[ASN][1000 genomes]
rs11779536	0.80[ASN][1000 genomes]
rs11985451	0.82[ASN][1000 genomes]
rs1512348	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1566158	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849339	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913025	0.84[ASN][1000 genomes]
rs2047378	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2048550	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2388373	0.84[ASN][1000 genomes]
rs2458272	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2515180	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2515192	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2515194	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2679733	0.82[ASN][1000 genomes]
rs2679734	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2679738	0.84[ASN][1000 genomes]
rs28693757	0.84[ASN][1000 genomes]
rs2935582	0.84[ASN][1000 genomes]
rs2935583	0.82[ASN][1000 genomes]
rs2942225	0.84[ASN][1000 genomes]
rs2945830	0.84[ASN][1000 genomes]
rs3018945	0.83[ASN][1000 genomes]
rs3018946	0.83[ASN][1000 genomes]
rs3018947	0.84[ASN][1000 genomes]
rs3019163	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4373497	0.84[ASN][1000 genomes]
rs4592000	0.84[ASN][1000 genomes]
rs492009	0.84[ASN][1000 genomes]
rs492108	0.84[ASN][1000 genomes]
rs493743	0.84[ASN][1000 genomes]
rs494767	0.84[ASN][1000 genomes]
rs494941	0.84[ASN][1000 genomes]
rs514502	0.83[ASN][1000 genomes]
rs515024	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs522300	0.81[ASN][1000 genomes]
rs525817	0.81[ASN][1000 genomes]
rs543674	0.83[ASN][1000 genomes]
rs543736	0.83[ASN][1000 genomes]
rs548291	0.81[ASN][1000 genomes]
rs549251	0.83[ASN][1000 genomes]
rs55743653	0.84[ASN][1000 genomes]
rs56004705	0.82[ASN][1000 genomes]
rs565338	0.81[ASN][1000 genomes]
rs571301	0.84[ASN][1000 genomes]
rs575524	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs577704	0.84[ASN][1000 genomes]
rs579324	0.84[ASN][1000 genomes]
rs582100	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs595227	0.83[ASN][1000 genomes]
rs596631	0.83[ASN][1000 genomes]
rs600667	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs611839	0.84[ASN][1000 genomes]
rs612340	0.84[ASN][1000 genomes]
rs612363	0.84[ASN][1000 genomes]
rs62525305	0.80[ASN][1000 genomes]
rs62525310	0.81[ASN][1000 genomes]
rs626234	0.84[ASN][1000 genomes]
rs626253	0.84[ASN][1000 genomes]
rs627111	0.84[ASN][1000 genomes]
rs640049	0.82[ASN][1000 genomes]
rs640903	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs641814	0.83[ASN][1000 genomes]
rs641839	0.82[ASN][1000 genomes]
rs693341	0.81[ASN][1000 genomes]
rs7013362	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7816151	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7816814	0.84[ASN][1000 genomes]
rs7834163	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7834756	0.84[ASN][1000 genomes]
rs868907	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea
3	chr8:104026200-104026600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:104026200-104026600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:104026200-104026800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:104026200-104026800	Enhancers	HUES6 Cell Line	embryonic stem cell

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