Variant report
| Variant | rs7834163 |
|---|---|
| Chromosome Location | chr8:104023751-104023752 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000155096 | Chromatin interaction |
| ENSG00000253320 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10099603 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1512348 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1566158 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1849339 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2679734 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2679738 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2935583 | 0.81[ASN][1000 genomes] |
| rs3018945 | 0.85[ASN][1000 genomes] |
| rs3018946 | 0.81[ASN][1000 genomes] |
| rs493743 | 0.86[ASN][1000 genomes] |
| rs515024 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs525817 | 0.83[ASN][1000 genomes] |
| rs55801214 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs575524 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs582100 | 0.92[ASN][1000 genomes] |
| rs600667 | 0.88[ASN][1000 genomes] |
| rs612340 | 0.81[ASN][1000 genomes] |
| rs62525305 | 0.84[ASN][1000 genomes] |
| rs640049 | 0.81[ASN][1000 genomes] |
| rs640903 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs641814 | 0.81[ASN][1000 genomes] |
| rs7013362 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7816151 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv33118 | chr8:103358567-104068172 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:104023200-104032000 | Weak transcription | K562 | blood |
| 2 | chr8:104023200-104032800 | Weak transcription | Pancreas | Pancrea |
