Variant report

Variant	rs515024
Chromosome Location	chr8:104009564-104009565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104009482..104012163-chr8:104031785..104034084,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254236	Chromatin interaction
ENSG00000155097	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10092124	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10099603	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955300	0.82[ASN][1000 genomes]
rs1512348	0.83[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566158	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1849339	0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1913025	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2047378	0.82[CEU][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap]
rs2048550	0.81[CEU][hapmap]
rs2388373	0.82[ASN][1000 genomes]
rs2515180	0.82[CEU][hapmap]
rs2515192	0.82[CEU][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap]
rs2515194	0.82[CEU][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap]
rs2679733	0.86[ASN][1000 genomes]
rs2679734	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2679738	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28693757	0.82[ASN][1000 genomes]
rs2935582	0.82[ASN][1000 genomes]
rs2935583	0.81[ASN][1000 genomes]
rs2942225	0.82[ASN][1000 genomes]
rs2945830	0.82[ASN][1000 genomes]
rs3018945	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3018946	0.81[ASN][1000 genomes]
rs3018947	0.82[ASN][1000 genomes]
rs3019163	0.80[GIH][hapmap];0.83[MEX][hapmap]
rs4373497	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4592000	0.82[ASN][1000 genomes]
rs492009	0.82[ASN][1000 genomes]
rs492108	0.82[ASN][1000 genomes]
rs493743	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs494767	0.82[ASN][1000 genomes]
rs494941	0.82[ASN][1000 genomes]
rs498193	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs514502	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs525817	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs543674	0.83[ASN][1000 genomes]
rs543736	0.83[ASN][1000 genomes]
rs549251	0.83[ASN][1000 genomes]
rs55743653	0.82[ASN][1000 genomes]
rs55801214	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563544	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs565338	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs571301	0.82[ASN][1000 genomes]
rs575524	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs577704	0.82[ASN][1000 genomes]
rs579324	0.82[ASN][1000 genomes]
rs582100	0.83[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595227	0.83[ASN][1000 genomes]
rs596631	0.83[ASN][1000 genomes]
rs600667	0.92[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs611839	0.82[ASN][1000 genomes]
rs612340	0.82[ASN][1000 genomes]
rs612363	0.82[ASN][1000 genomes]
rs626234	0.82[ASN][1000 genomes]
rs626253	0.82[ASN][1000 genomes]
rs627111	0.82[ASN][1000 genomes]
rs640049	0.81[ASN][1000 genomes]
rs640903	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs641814	0.81[ASN][1000 genomes]
rs641839	0.81[ASN][1000 genomes]
rs661012	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs688298	0.80[ASN][1000 genomes]
rs693341	0.85[ASN][1000 genomes]
rs7013362	0.96[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7816151	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816814	0.82[ASN][1000 genomes]
rs7834163	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7834756	0.82[ASN][1000 genomes]
rs868907	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
4	chr8:104004000-104010200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:104006800-104012400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:104007200-104014400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:104007600-104010600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:104007600-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:104007600-104011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:104007600-104011800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:104007600-104014200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:104008000-104012200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr8:104008600-104010600	Weak transcription	Primary B cells from cord blood	blood
14	chr8:104008600-104012400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:104009000-104010800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:104009000-104011800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:104009000-104012400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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