Variant report

Variant	rs11777066
Chromosome Location	chr8:104035774-104035775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103874643..103878099-chr8:104031324..104040310,20	MCF-7	breast:
2	chr8:103873594..103879966-chr8:104029090..104036191,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000253320	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10092124	0.96[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10955300	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11775734	0.81[AMR][1000 genomes]
rs11775864	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11779536	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11985451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849339	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1913025	0.96[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2048549	0.85[CEU][hapmap];0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs2388373	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2454045	0.81[YRI][hapmap]
rs2515174	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2515197	0.84[YRI][hapmap]
rs2679733	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28693757	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2935582	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2935583	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2942225	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2945830	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3018946	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3018947	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4373497	0.96[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4592000	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492009	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492108	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494767	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494941	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs498193	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs514502	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs522300	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs543674	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs543736	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs548291	0.83[ASN][1000 genomes]
rs549251	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55743653	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55801214	0.82[ASN][1000 genomes]
rs56004705	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563544	0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs565338	0.95[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs571301	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs577704	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs579324	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs595227	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs596631	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs611839	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs612340	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs612363	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62525305	0.82[ASN][1000 genomes]
rs62525310	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs626234	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs626253	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs627111	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs640049	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs641814	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs641839	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs661012	0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs693341	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7013362	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7816814	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7834756	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7834916	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs868907	0.95[CEU][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104033800-104036600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr8:104034000-104043600	Weak transcription	Aorta	Aorta
3	chr8:104034200-104036000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:104034200-104036400	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:104034200-104038000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:104034200-104068800	Weak transcription	Small Intestine	intestine
7	chr8:104034400-104035800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104034400-104036000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:104034400-104036200	Enhancers	Fetal Thymus	thymus
10	chr8:104034400-104036400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:104034400-104036600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:104034400-104037400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:104034400-104037800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr8:104034400-104038200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr8:104034400-104043400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:104034400-104059400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:104034400-104069400	Weak transcription	Esophagus	oesophagus
18	chr8:104034600-104035800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:104034600-104035800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:104034600-104035800	Enhancers	Brain Germinal Matrix	brain
21	chr8:104034600-104035800	Enhancers	Fetal Lung	lung
22	chr8:104034600-104035800	Enhancers	Thymus	Thymus
23	chr8:104034600-104036200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr8:104034600-104036200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:104034600-104036200	Enhancers	Liver	Liver
26	chr8:104034600-104036200	Enhancers	Colon Smooth Muscle	Colon
27	chr8:104034600-104036800	Enhancers	Primary hematopoietic stem cells	blood
28	chr8:104034600-104036800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:104034600-104037600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:104034600-104038200	Enhancers	K562	blood
31	chr8:104034600-104040600	Weak transcription	Stomach Mucosa	stomach
32	chr8:104034600-104043600	Weak transcription	Brain Substantia Nigra	brain
33	chr8:104034600-104050200	Weak transcription	Fetal Stomach	stomach
34	chr8:104034600-104053000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:104034600-104059800	Weak transcription	A549	lung
36	chr8:104034600-104063600	Weak transcription	HSMMtube	muscle
37	chr8:104034600-104068400	Weak transcription	Right Ventricle	heart
38	chr8:104034800-104035800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:104034800-104035800	Enhancers	Primary T cells from cord blood	blood
40	chr8:104034800-104035800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr8:104034800-104035800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:104034800-104035800	Enhancers	Dnd41	blood
43	chr8:104034800-104036200	Enhancers	Fetal Brain Male	brain
44	chr8:104034800-104036400	Enhancers	HepG2	liver
45	chr8:104034800-104036800	Enhancers	Adipose Nuclei	Adipose
46	chr8:104034800-104036800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:104034800-104036800	Weak transcription	Fetal Brain Female	brain
48	chr8:104034800-104037400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:104034800-104037400	Weak transcription	Fetal Heart	heart
50	chr8:104034800-104037800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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