Variant report

Variant	rs2515174
Chromosome Location	chr8:104029480-104029481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092124	0.81[CEU][hapmap]
rs11775864	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11777066	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11779536	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11985451	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1913025	0.81[CEU][hapmap]
rs2047378	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2048549	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2048550	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2515180	0.87[JPT][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs2515192	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2515194	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3019163	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4373497	0.81[CEU][hapmap]
rs56004705	0.84[ASN][1000 genomes]
rs62525310	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv967623	chr8:104028984-104031355	Weak transcription	CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea
3	chr8:104026600-104032000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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