Variant report

Variant	rs11779536
Chromosome Location	chr8:104041334-104041335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104037448..104042958-chr8:104046176..104050630,6	K562	blood:
2	chr8:104039861..104042751-chr8:104047138..104050015,2	MCF-7	breast:
3	chr8:104038722..104042958-chr8:104046320..104050630,4	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10092124	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10955300	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11775734	0.82[AMR][1000 genomes]
rs11775864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11777066	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11985451	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1849339	0.80[ASN][1000 genomes]
rs1913025	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2388373	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2454045	0.80[AFR][1000 genomes]
rs2515174	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515197	0.86[AFR][1000 genomes]
rs2679733	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28693757	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2935582	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2935583	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2942225	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2945830	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3018946	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3018947	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4373497	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4592000	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs492009	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs492108	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs494767	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs494941	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs498193	0.80[EUR][1000 genomes]
rs514502	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs522300	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs543674	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs543736	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs548291	0.81[ASN][1000 genomes]
rs549251	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55743653	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55801214	0.80[ASN][1000 genomes]
rs56004705	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs563544	0.82[EUR][1000 genomes]
rs565338	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs571301	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs577704	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs579324	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs595227	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596631	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs611839	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs612340	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs612363	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525305	0.80[ASN][1000 genomes]
rs62525310	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs626234	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs626253	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs627111	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs640049	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs641814	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs641839	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs661012	0.82[EUR][1000 genomes]
rs693341	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7013362	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7816814	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7834756	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7834916	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs868907	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104034000-104043600	Weak transcription	Aorta	Aorta
2	chr8:104034200-104068800	Weak transcription	Small Intestine	intestine
3	chr8:104034400-104043400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:104034400-104059400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:104034400-104069400	Weak transcription	Esophagus	oesophagus
6	chr8:104034600-104043600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:104034600-104050200	Weak transcription	Fetal Stomach	stomach
8	chr8:104034600-104053000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:104034600-104059800	Weak transcription	A549	lung
10	chr8:104034600-104063600	Weak transcription	HSMMtube	muscle
11	chr8:104034600-104068400	Weak transcription	Right Ventricle	heart
12	chr8:104034800-104042400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:104034800-104043000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:104034800-104048000	Weak transcription	NHDF-Ad	bronchial
15	chr8:104034800-104053000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:104034800-104054200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:104034800-104054200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:104034800-104054400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:104034800-104058800	Weak transcription	HSMM	muscle
20	chr8:104034800-104058800	Weak transcription	NH-A	brain
21	chr8:104034800-104065600	Weak transcription	Fetal Kidney	kidney
22	chr8:104034800-104074600	Weak transcription	NHEK	skin
23	chr8:104035000-104042400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:104035200-104053200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:104035200-104054200	Weak transcription	Placenta	Placenta
26	chr8:104035400-104042400	Weak transcription	Brain Anterior Caudate	brain
27	chr8:104035400-104042800	Weak transcription	Fetal Intestine Small	intestine
28	chr8:104035400-104043200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:104035400-104047800	Weak transcription	Lung	lung
30	chr8:104035400-104050200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:104035400-104050200	Weak transcription	Left Ventricle	heart
32	chr8:104035400-104053000	Weak transcription	Fetal Intestine Large	intestine
33	chr8:104035400-104053600	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:104035400-104054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:104035400-104054600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:104035400-104061800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:104035400-104071200	Weak transcription	Brain Angular Gyrus	brain
38	chr8:104035600-104042400	Weak transcription	Primary B cells from cord blood	blood
39	chr8:104035600-104042800	Weak transcription	Hela-S3	cervix
40	chr8:104035600-104043600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:104035600-104050200	Weak transcription	Right Atrium	heart
42	chr8:104035600-104053000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:104035600-104053200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:104035600-104054200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr8:104035600-104054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:104035600-104054600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:104035800-104043000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:104035800-104048000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:104035800-104053600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:104035800-104054200	Weak transcription	Fetal Lung	lung

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