Variant report

Variant	rs2458287
Chromosome Location	chr8:103979714-103979715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103874330..103878583-chr8:103978201..103983603,5	MCF-7	breast:
2	chr8:103874838..103876433-chr8:103978031..103981018,2	MCF-7	breast:
3	chr8:103979381..103981672-chr8:103986062..103989018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1512348	0.82[YRI][hapmap]
rs16870020	0.82[YRI][hapmap]
rs16870035	0.82[YRI][hapmap]
rs2458286	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs575524	0.82[YRI][hapmap]
rs582100	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv465752	chr8:103953990-103979714	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv611823	chr8:103953990-103979714	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1803798	chr8:103974458-103987922	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103974200-103979800	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:103974400-103980400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:103974400-103980800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:103974400-103989200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:103974400-103989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:103974800-103982200	Weak transcription	GM12878-XiMat	blood
7	chr8:103975000-103980400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:103976200-103981400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:103977000-103989200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:103977200-103985200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:103977800-103980600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:103977800-103981400	Enhancers	Fetal Lung	lung
13	chr8:103978200-103980000	Weak transcription	Placenta	Placenta
14	chr8:103978600-103980600	Weak transcription	Liver	Liver
15	chr8:103978600-103980800	Enhancers	Ovary	ovary
16	chr8:103978800-103980400	Weak transcription	Adipose Nuclei	Adipose
17	chr8:103979000-103982800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr8:103979200-103980000	Enhancers	Right Atrium	heart
19	chr8:103979400-103980200	Enhancers	Pancreas	Pancrea
20	chr8:103979400-103980800	Enhancers	Fetal Stomach	stomach
21	chr8:103979600-103981400	Enhancers	Brain Anterior Caudate	brain
22	chr8:103979600-103982400	Weak transcription	Primary monocytes fromperipheralblood	blood

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