Variant report

Variant	rs16870035
Chromosome Location	chr8:104087365-104087366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104083655..104086028-chr8:104086972..104089914,2	MCF-7	breast:
2	chr8:104087192..104090811-chr8:104308790..104311977,3	MCF-7	breast:
3	chr8:104087001..104087885-chr8:104524047..104524632,2	MCF-7	breast:
4	chr8:103874579..103878477-chr8:104084832..104088303,4	MCF-7	breast:
5	chr8:104087016..104090953-chr8:104310983..104313064,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000247081	Chromatin interaction
ENSG00000164930	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1512348	1.00[YRI][hapmap]
rs16869976	0.85[YRI][hapmap]
rs16869978	0.85[YRI][hapmap]
rs16870020	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs16870052	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs2458287	0.82[YRI][hapmap]
rs575524	1.00[YRI][hapmap]
rs582100	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104050600-104089600	Weak transcription	Psoas Muscle	Psoas
2	chr8:104051600-104087400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:104066800-104091200	Weak transcription	Stomach Mucosa	stomach
4	chr8:104069800-104090800	Weak transcription	Aorta	Aorta
5	chr8:104073400-104087600	Weak transcription	Colonic Mucosa	Colon
6	chr8:104073800-104088000	Weak transcription	Right Atrium	heart
7	chr8:104079400-104087800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:104080400-104091200	Weak transcription	Small Intestine	intestine
9	chr8:104081200-104088400	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:104081200-104089800	Weak transcription	Left Ventricle	heart
11	chr8:104081200-104091000	Weak transcription	Ovary	ovary
12	chr8:104081800-104087400	Weak transcription	HepG2	liver
13	chr8:104082000-104089000	Weak transcription	NHLF	lung
14	chr8:104082600-104090000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:104082600-104090200	Weak transcription	HMEC	breast
16	chr8:104083200-104089600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:104083200-104090200	Weak transcription	Primary B cells from cord blood	blood
18	chr8:104083200-104090600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:104083400-104088200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:104083400-104088400	Weak transcription	HSMMtube	muscle
21	chr8:104083400-104088400	Weak transcription	NHDF-Ad	bronchial
22	chr8:104083400-104090200	Weak transcription	HSMM	muscle
23	chr8:104083600-104088000	Weak transcription	Right Ventricle	heart
24	chr8:104083600-104088200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:104083600-104088600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:104083600-104093000	Weak transcription	Placenta	Placenta
27	chr8:104083800-104088400	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:104084000-104090000	Weak transcription	Gastric	stomach
29	chr8:104084000-104090400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:104084200-104088000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:104084200-104088000	Weak transcription	Lung	lung
32	chr8:104084200-104088400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:104084200-104088600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:104084200-104090400	Weak transcription	Fetal Stomach	stomach
35	chr8:104084200-104090800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:104084200-104090800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:104084200-104091000	Weak transcription	Thymus	Thymus
38	chr8:104084400-104090200	Weak transcription	Fetal Thymus	thymus
39	chr8:104085000-104089600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:104085200-104088200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:104085400-104088000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:104085400-104089400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr8:104085600-104088600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:104085800-104087400	Weak transcription	NH-A	brain
45	chr8:104085800-104088800	Enhancers	Brain Hippocampus Middle	brain
46	chr8:104085800-104089200	Enhancers	Brain Cingulate Gyrus	brain
47	chr8:104086200-104087800	Weak transcription	GM12878-XiMat	blood
48	chr8:104086200-104088200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr8:104086200-104088200	Weak transcription	HUVEC	blood vessel
50	chr8:104086200-104088400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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