Variant report

Variant	rs16870107
Chromosome Location	chr6:93358071-93358072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10498980	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16869979	0.81[EUR][1000 genomes]
rs16869986	0.81[EUR][1000 genomes]
rs16869990	0.81[EUR][1000 genomes]
rs16869995	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16870004	0.91[EUR][1000 genomes]
rs16870037	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16870182	0.81[EUR][1000 genomes]
rs16870197	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1834730	0.81[EUR][1000 genomes]
rs1896234	1.00[AFR][1000 genomes]
rs2183002	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2261248	0.90[JPT][hapmap]
rs2325462	0.81[EUR][1000 genomes]
rs2860136	0.91[EUR][1000 genomes]
rs41339346	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4706416	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4706417	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4707756	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4707757	0.81[EUR][1000 genomes]
rs56018944	0.81[EUR][1000 genomes]
rs56217224	0.81[EUR][1000 genomes]
rs58290198	0.81[EUR][1000 genomes]
rs59122508	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59717399	0.81[EUR][1000 genomes]
rs6904770	0.81[EUR][1000 genomes]
rs6937226	0.81[EUR][1000 genomes]
rs72495305	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72495306	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73516243	0.81[EUR][1000 genomes]
rs73518253	0.81[EUR][1000 genomes]
rs73518298	0.81[EUR][1000 genomes]
rs73518301	0.81[EUR][1000 genomes]
rs73754313	0.81[EUR][1000 genomes]
rs73754351	0.81[EUR][1000 genomes]
rs783615	0.80[ASN][1000 genomes]
rs9445012	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9445017	0.81[EUR][1000 genomes]
rs9452076	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9452079	0.81[EUR][1000 genomes]
rs9452082	0.81[EUR][1000 genomes]
rs9452084	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9452085	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9452086	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9452094	0.81[EUR][1000 genomes]
rs9452096	0.81[EUR][1000 genomes]
rs997595	0.90[EUR][1000 genomes]
rs997596	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93357200-93358800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links