Variant report

Variant	rs1834730
Chromosome Location	chr6:93232109-93232110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:93224517..93226588-chr6:93230542..93232211,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10498980	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11962070	0.98[AFR][1000 genomes]
rs1365713	0.88[ASN][1000 genomes]
rs16869979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16869986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16869990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869995	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16870004	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16870037	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16870107	0.81[EUR][1000 genomes]
rs2183002	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2730835	0.83[ASN][1000 genomes]
rs2795079	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2860136	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3919620	0.89[ASN][1000 genomes]
rs41339346	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4706413	0.89[ASN][1000 genomes]
rs4706416	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4706417	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4707745	0.93[AMR][1000 genomes]
rs55662264	0.93[AFR][1000 genomes]
rs56018944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56217224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57691342	0.81[AFR][1000 genomes]
rs57766106	0.89[ASN][1000 genomes]
rs58290198	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910274	0.86[AFR][1000 genomes]
rs6937226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939388	0.89[ASN][1000 genomes]
rs72495305	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72495306	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73754309	0.88[AFR][1000 genomes]
rs73754310	0.93[AFR][1000 genomes]
rs73754313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73757028	0.81[AFR][1000 genomes]
rs783849	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs783851	0.83[ASN][1000 genomes]
rs783863	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs813656	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93230600-93232400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links