Variant report

Variant	rs55662264
Chromosome Location	chr6:93252508-93252509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11962070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869979	0.98[AFR][1000 genomes]
rs16869986	0.98[AFR][1000 genomes]
rs1834730	0.93[AFR][1000 genomes]
rs56018944	0.98[AFR][1000 genomes]
rs57691342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58290198	0.98[AFR][1000 genomes]
rs6900190	1.00[AMR][1000 genomes]
rs6904770	0.98[AFR][1000 genomes]
rs6910274	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937226	0.98[AFR][1000 genomes]
rs73754309	0.95[AFR][1000 genomes]
rs73754310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754313	0.98[AFR][1000 genomes]
rs73757027	1.00[AMR][1000 genomes]
rs73757028	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93250600-93254000	Weak transcription	HUVEC	blood vessel
2	chr6:93252400-93268800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links