Variant report

Variant	rs73757027
Chromosome Location	chr6:93206490-93206491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11962070	1.00[AMR][1000 genomes]
rs55662264	1.00[AMR][1000 genomes]
rs57691342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59207004	0.91[AFR][1000 genomes]
rs6900190	1.00[AMR][1000 genomes]
rs6910274	1.00[AMR][1000 genomes]
rs73754310	1.00[AMR][1000 genomes]
rs73757028	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017729	chr6:92600697-93206779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830731	chr6:92963454-93207176	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762607	chr6:93180428-93214365	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3475250	chr6:93205171-93208018	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3475251	chr6:93205171-93208018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93206200-93206600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:93206200-93206600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:93206200-93206600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:93206200-93206600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:93206200-93206600	Enhancers	Ovary	ovary
6	chr6:93206200-93206800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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