Variant report

Variant	rs57691342
Chromosome Location	chr6:93208021-93208022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11962070	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869979	0.81[AFR][1000 genomes]
rs16869986	0.81[AFR][1000 genomes]
rs1834730	0.81[AFR][1000 genomes]
rs55662264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56018944	0.81[AFR][1000 genomes]
rs58290198	0.81[AFR][1000 genomes]
rs6900190	1.00[AMR][1000 genomes]
rs6904770	0.81[AFR][1000 genomes]
rs6910274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937226	0.81[AFR][1000 genomes]
rs73754310	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754313	0.81[AFR][1000 genomes]
rs73757027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73757028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762607	chr6:93180428-93214365	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3395765	chr6:93207131-93211129	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93207800-93208200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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