Variant report

Variant	rs16869979
Chromosome Location	chr6:93250486-93250487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10498980	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962070	0.93[AFR][1000 genomes]
rs1365713	0.86[ASN][1000 genomes]
rs16869986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16869990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16869995	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16870004	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16870037	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16870107	0.81[EUR][1000 genomes]
rs1834730	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2183002	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2261248	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs2730835	0.83[ASN][1000 genomes]
rs2795079	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2860136	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3919620	0.87[ASN][1000 genomes]
rs41339346	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706413	0.87[ASN][1000 genomes]
rs4706416	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706417	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4707745	0.93[AMR][1000 genomes]
rs55662264	0.98[AFR][1000 genomes]
rs56018944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56217224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57691342	0.81[AFR][1000 genomes]
rs57766106	0.87[ASN][1000 genomes]
rs58290198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6910274	0.90[AFR][1000 genomes]
rs6937226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939388	0.87[ASN][1000 genomes]
rs72495305	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72495306	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73754309	0.93[AFR][1000 genomes]
rs73754310	0.98[AFR][1000 genomes]
rs73754313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73757028	0.81[AFR][1000 genomes]
rs783849	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs783851	0.83[ASN][1000 genomes]
rs783863	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs813656	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93247400-93250600	Enhancers	HUVEC	blood vessel
2	chr6:93248400-93251200	Weak transcription	Fetal Heart	heart

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