Variant report

Variant	rs6939388
Chromosome Location	chr6:93196424-93196425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10498980	0.87[ASN][1000 genomes]
rs1365713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16869979	0.87[ASN][1000 genomes]
rs16869986	0.87[ASN][1000 genomes]
rs16869990	0.86[ASN][1000 genomes]
rs16869995	0.81[ASN][1000 genomes]
rs16870004	0.82[ASN][1000 genomes]
rs16870037	0.82[ASN][1000 genomes]
rs1834730	0.89[ASN][1000 genomes]
rs2183002	0.82[ASN][1000 genomes]
rs2795079	0.80[ASN][1000 genomes]
rs2860136	0.82[ASN][1000 genomes]
rs3919620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41339346	0.82[ASN][1000 genomes]
rs4706413	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706416	0.87[ASN][1000 genomes]
rs4706417	0.81[ASN][1000 genomes]
rs56018944	0.87[ASN][1000 genomes]
rs56217224	0.96[ASN][1000 genomes]
rs57766106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290198	0.87[ASN][1000 genomes]
rs6904770	0.86[ASN][1000 genomes]
rs6937226	0.87[ASN][1000 genomes]
rs72495305	0.86[ASN][1000 genomes]
rs72495306	0.86[ASN][1000 genomes]
rs73514227	0.82[EUR][1000 genomes]
rs73754313	0.87[ASN][1000 genomes]
rs783863	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017729	chr6:92600697-93206779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528633	chr6:92601636-93200633	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830731	chr6:92963454-93207176	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886354	chr6:93127953-93199724	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2762607	chr6:93180428-93214365	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93192000-93198000	Weak transcription	Fetal Heart	heart

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