Variant report
Variant | rs11962070 |
---|---|
Chromosome Location | chr6:93230702-93230703 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:93224517..93226588-chr6:93230542..93232211,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16869979 | 0.93[AFR][1000 genomes] |
rs16869986 | 0.93[AFR][1000 genomes] |
rs1834730 | 0.98[AFR][1000 genomes] |
rs55662264 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56018944 | 0.93[AFR][1000 genomes] |
rs57691342 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58290198 | 0.93[AFR][1000 genomes] |
rs6900190 | 1.00[AMR][1000 genomes] |
rs6904770 | 0.93[AFR][1000 genomes] |
rs6910274 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6937226 | 0.93[AFR][1000 genomes] |
rs73754309 | 0.91[AFR][1000 genomes] |
rs73754310 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73754313 | 0.93[AFR][1000 genomes] |
rs73757027 | 1.00[AMR][1000 genomes] |
rs73757028 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1845487 | chr6:93099906-93306808 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv886355 | chr6:93166766-93530757 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1018402 | chr6:93173579-93855804 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
4 | nsv886356 | chr6:93179624-93293303 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:93230600-93232400 | Enhancers | HUVEC | blood vessel |