Variant report

Variant	rs16871207
Chromosome Location	chr6:11288980-11288981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11281338..11286623-chr6:11287034..11292719,6	K562	blood:
2	chr6:11229897..11233215-chr6:11287734..11292483,5	MCF-7	breast:
3	chr6:11287788..11289763-chr6:11342477..11344920,2	MCF-7	breast:
4	chr6:11288344..11289961-chr6:11388125..11390631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10484451	0.85[CEU][hapmap]
rs16871239	1.00[CEU][hapmap]
rs16871249	0.85[CEU][hapmap]
rs2142742	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2876226	0.87[EUR][1000 genomes]
rs4713395	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11276200-11295800	Weak transcription	Thymus	Thymus
2	chr6:11276600-11295600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11276800-11291600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:11277000-11292400	Weak transcription	Fetal Thymus	thymus
5	chr6:11277600-11296000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:11278000-11295400	Strong transcription	Primary B cells from cord blood	blood
7	chr6:11278600-11295000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
9	chr6:11278800-11290600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:11279000-11292200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:11279200-11292600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:11279600-11292800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:11279800-11292400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:11281600-11295600	Weak transcription	Spleen	Spleen
16	chr6:11281800-11295000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:11282400-11290400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:11282800-11295800	Weak transcription	Lung	lung
19	chr6:11283800-11291000	Weak transcription	HepG2	liver
20	chr6:11284000-11290400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:11284400-11292400	Weak transcription	Small Intestine	intestine
22	chr6:11286600-11300200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr6:11287000-11292800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:11287400-11289000	Enhancers	Fetal Intestine Large	intestine
25	chr6:11287400-11289400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:11287400-11298000	Strong transcription	Primary T cells from cord blood	blood
27	chr6:11287600-11294600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:11287800-11289000	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:11287800-11289200	Enhancers	Fetal Intestine Small	intestine
30	chr6:11287800-11289400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr6:11287800-11289400	Enhancers	Stomach Mucosa	stomach
32	chr6:11287800-11290400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:11288000-11289200	Enhancers	Colonic Mucosa	Colon
34	chr6:11288200-11289000	Enhancers	Gastric	stomach
35	chr6:11288200-11292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:11288400-11289000	Enhancers	Colon Smooth Muscle	Colon
37	chr6:11288600-11289000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr6:11288600-11290600	Weak transcription	GM12878-XiMat	blood
39	chr6:11288800-11289000	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:11288800-11292400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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