Variant report

Variant	rs2876226
Chromosome Location	chr6:11294196-11294197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11231480..11233069-chr6:11294157..11295723,2	MCF-7	breast:
2	chr6:11293445..11296108-chr6:11306928..11309267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484451	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16871207	0.87[EUR][1000 genomes]
rs16871239	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16871249	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2142742	0.92[AMR][1000 genomes]
rs3734406	0.82[ASN][1000 genomes]
rs4713395	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713397	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713398	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56172258	0.84[AMR][1000 genomes]
rs73362884	0.87[EUR][1000 genomes]
rs7743486	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11276200-11295800	Weak transcription	Thymus	Thymus
2	chr6:11276600-11295600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11277600-11296000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:11278000-11295400	Strong transcription	Primary B cells from cord blood	blood
5	chr6:11278600-11295000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
7	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:11281600-11295600	Weak transcription	Spleen	Spleen
9	chr6:11281800-11295000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:11282800-11295800	Weak transcription	Lung	lung
11	chr6:11286600-11300200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:11287400-11298000	Strong transcription	Primary T cells from cord blood	blood
13	chr6:11287600-11294600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:11289000-11294200	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:11289000-11299400	Weak transcription	Gastric	stomach
16	chr6:11289400-11297000	Weak transcription	Stomach Mucosa	stomach
17	chr6:11290600-11299800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:11292600-11305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:11292800-11294400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:11292800-11295000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:11292800-11295200	Weak transcription	Fetal Thymus	thymus
22	chr6:11293000-11295400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:11293000-11295600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:11293000-11297400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:11293000-11298400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:11293000-11299800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:11293200-11295000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:11293200-11295200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:11293200-11295600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:11293200-11296800	Weak transcription	Fetal Intestine Large	intestine
31	chr6:11293200-11299200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:11293200-11299200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:11293200-11305200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:11293200-11307600	Weak transcription	Placenta	Placenta
35	chr6:11293400-11294800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:11293400-11295800	Weak transcription	Fetal Intestine Small	intestine
37	chr6:11294000-11298000	ZNF genes & repeats	GM12878-XiMat	blood

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