Variant report

Variant	rs7743486
Chromosome Location	chr6:11315652-11315653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11230191..11234687-chr6:11312195..11319542,11	MCF-7	breast:
2	chr6:11231155..11233005-chr6:11312964..11316514,3	MCF-7	breast:
3	chr6:11311300..11313647-chr6:11314495..11317056,3	MCF-7	breast:
4	chr6:11308195..11312483-chr6:11313916..11317993,6	MCF-7	breast:
5	chr6:11313707..11316163-chr6:11342424..11344651,2	MCF-7	breast:
6	chr6:11251383..11252973-chr6:11314441..11316599,2	MCF-7	breast:
7	chr6:11252992..11255266-chr6:11314178..11316876,2	MCF-7	breast:
8	chr6:11207669..11210620-chr6:11314180..11315786,2	MCF-7	breast:
9	chr6:11315614..11317309-chr6:11319583..11322409,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484451	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871239	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16871249	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066919	0.83[AMR][1000 genomes]
rs2142742	0.84[AMR][1000 genomes]
rs2876226	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56172258	0.84[AMR][1000 genomes]
rs73362884	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11305800-11319400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:11306000-11319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11306200-11318000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:11306400-11318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:11306400-11319400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:11306600-11318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:11306600-11319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11307000-11316400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:11307000-11319400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:11307200-11317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:11307400-11316400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:11308000-11317800	Weak transcription	GM12878-XiMat	blood
14	chr6:11310800-11316000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:11310800-11316000	Weak transcription	Small Intestine	intestine
16	chr6:11310800-11316200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:11310800-11316200	Weak transcription	HepG2	liver
18	chr6:11310800-11317800	Weak transcription	Lung	lung
19	chr6:11310800-11319600	Weak transcription	Gastric	stomach
20	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
22	chr6:11311200-11317000	Weak transcription	Thymus	Thymus
23	chr6:11311400-11317800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:11311400-11317800	Weak transcription	Placenta	Placenta
25	chr6:11311600-11317800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:11312200-11319600	Strong transcription	Primary T cells from cord blood	blood
27	chr6:11312800-11318200	Weak transcription	Spleen	Spleen
28	chr6:11313800-11318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:11313800-11320200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:11314400-11316600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:11314600-11319600	Weak transcription	Fetal Brain Male	brain
32	chr6:11315000-11316200	Enhancers	HUVEC	blood vessel
33	chr6:11315000-11318400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:11315000-11322800	Strong transcription	Primary B cells from cord blood	blood
35	chr6:11315200-11316000	Enhancers	NHEK	skin
36	chr6:11315200-11316200	Enhancers	A549	lung
37	chr6:11315200-11317400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:11315200-11320000	Enhancers	HMEC	breast
39	chr6:11315400-11316200	Enhancers	Right Atrium	heart
40	chr6:11315400-11317000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr6:11315400-11318000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:11315400-11319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:11315400-11320000	Enhancers	Fetal Intestine Small	intestine
44	chr6:11315600-11316600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:11315600-11317400	Enhancers	Placenta Amnion	Placenta Amnion
46	chr6:11315600-11319200	Weak transcription	Rectal Smooth Muscle	rectum

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