Variant report

Variant	rs4713395
Chromosome Location	chr6:11311851-11311852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11306910..11309167-chr6:11309172..11312096,2	MCF-7	breast:
2	chr6:11308195..11312483-chr6:11313916..11317993,6	MCF-7	breast:
3	chr6:11311300..11313647-chr6:11314495..11317056,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484451	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871207	0.85[CEU][hapmap]
rs16871239	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16871249	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066919	0.83[AMR][1000 genomes]
rs2142742	0.84[AMR][1000 genomes]
rs2876226	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713397	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713398	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56172258	0.84[AMR][1000 genomes]
rs73362884	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7743486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11299800-11314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:11305800-11319400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:11306000-11319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11306200-11313200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:11306200-11318000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:11306400-11318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:11306400-11319400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:11306600-11318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:11306600-11319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:11307000-11315400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:11307000-11316400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:11307000-11319400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:11307200-11317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:11307400-11316400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:11308000-11317800	Weak transcription	GM12878-XiMat	blood
17	chr6:11308200-11313800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:11309400-11314200	Strong transcription	Primary B cells from cord blood	blood
19	chr6:11310600-11312200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:11310600-11312400	Weak transcription	Spleen	Spleen
21	chr6:11310800-11315600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:11310800-11316000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:11310800-11316000	Weak transcription	Small Intestine	intestine
24	chr6:11310800-11316200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:11310800-11316200	Weak transcription	HepG2	liver
26	chr6:11310800-11317800	Weak transcription	Lung	lung
27	chr6:11310800-11319600	Weak transcription	Gastric	stomach
28	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:11311000-11315400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
31	chr6:11311200-11317000	Weak transcription	Thymus	Thymus
32	chr6:11311400-11312200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:11311400-11317800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:11311400-11317800	Weak transcription	Placenta	Placenta
35	chr6:11311600-11312600	Genic enhancers	Primary B cells from peripheral blood	blood
36	chr6:11311600-11317800	Weak transcription	Primary monocytes fromperipheralblood	blood

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