Variant report

Variant	rs16871458
Chromosome Location	chr6:11554898-11554899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1403137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2103027	1.00[AMR][1000 genomes]
rs56205367	1.00[AMR][1000 genomes]
rs6912815	1.00[AMR][1000 genomes]
rs73721742	1.00[AMR][1000 genomes]
rs73721745	1.00[AMR][1000 genomes]
rs73721746	1.00[AMR][1000 genomes]
rs73721754	1.00[AMR][1000 genomes]
rs7451490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11540600-11566600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11541400-11556000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:11548000-11566600	Weak transcription	Placenta	Placenta
4	chr6:11548200-11565800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:11551600-11566600	Weak transcription	Aorta	Aorta
6	chr6:11552800-11566800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:11553000-11556400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:11553200-11556400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:11553200-11556400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:11553200-11556600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:11553200-11556600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:11553200-11556600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:11553200-11565000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:11553400-11556000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:11553400-11556400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11553400-11556600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:11553400-11565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:11553400-11566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:11553400-11566800	Weak transcription	Gastric	stomach
20	chr6:11553400-11567000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:11553600-11556400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:11554400-11556000	Weak transcription	Primary monocytes fromperipheralblood	blood

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