Variant report

Variant	rs6912815
Chromosome Location	chr6:11495960-11495961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11093559..11095482-chr6:11495067..11496598,2	MCF-7	breast:
2	chr6:11224747..11226720-chr6:11494534..11496251,2	MCF-7	breast:
3	chr6:11229014..11231620-chr6:11494391..11496101,2	MCF-7	breast:
4	chr6:11232197..11234142-chr6:11494778..11496668,2	MCF-7	breast:
5	chr6:11390303..11392933-chr6:11494450..11496978,4	MCF-7	breast:
6	chr6:11144071..11145293-chr6:11495634..11497487,8	K562	blood:
7	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
8	chr6:11489653..11491693-chr6:11494680..11496394,2	MCF-7	breast:
9	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
10	chr6:11230707..11237186-chr6:11493072..11498269,11	MCF-7	breast:
11	chr6:11143454..11145339-chr6:11495146..11498003,3	MCF-7	breast:
12	chr6:11142754..11146580-chr6:11494452..11498982,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction
ENSG00000224531	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1403137	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16871458	1.00[AMR][1000 genomes]
rs2103027	1.00[AMR][1000 genomes]
rs56205367	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606402	0.92[YRI][hapmap]
rs6927244	0.87[LWK][hapmap]
rs73721742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721748	0.94[AFR][1000 genomes]
rs73721750	0.97[AFR][1000 genomes]
rs73721754	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7451490	1.00[AMR][1000 genomes]
rs7757865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689511	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11486800-11496000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
5	chr6:11492000-11498200	Enhancers	A549	lung
6	chr6:11492200-11497400	Enhancers	HepG2	liver
7	chr6:11492800-11496000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:11493000-11499800	Weak transcription	NH-A	brain
9	chr6:11493200-11496000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:11493400-11496200	Weak transcription	Osteobl	bone
11	chr6:11493400-11497600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:11493400-11498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:11493600-11496400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:11493600-11496800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:11494200-11496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:11494200-11498200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:11494400-11500600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:11494600-11496000	Enhancers	Lung	lung
19	chr6:11494600-11496000	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:11494600-11496600	Enhancers	Fetal Heart	heart
21	chr6:11494600-11497200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:11494800-11496000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:11494800-11496400	Enhancers	Fetal Stomach	stomach
24	chr6:11494800-11496600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:11495000-11496000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:11495000-11496000	Enhancers	Left Ventricle	heart
27	chr6:11495000-11497000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:11495000-11497200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:11495200-11496200	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:11495200-11496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:11495200-11496400	Enhancers	Brain Angular Gyrus	brain
32	chr6:11495400-11496000	Weak transcription	Brain Anterior Caudate	brain
33	chr6:11495400-11496600	Weak transcription	Placenta	Placenta
34	chr6:11495400-11497000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:11495600-11496400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:11495600-11496600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:11495600-11496600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:11495600-11496600	Enhancers	Fetal Lung	lung
39	chr6:11495800-11496400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr6:11495800-11496400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:11495800-11496600	Enhancers	Fetal Kidney	kidney
42	chr6:11495800-11496800	Enhancers	Hela-S3	cervix
43	chr6:11495800-11497000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:11495800-11497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:11495800-11497200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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