Variant report

Variant	rs73721745
Chromosome Location	chr6:11494909-11494910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11224747..11226720-chr6:11494534..11496251,2	MCF-7	breast:
2	chr6:11229014..11231620-chr6:11494391..11496101,2	MCF-7	breast:
3	chr6:11232197..11234142-chr6:11494778..11496668,2	MCF-7	breast:
4	chr6:11390303..11392933-chr6:11494450..11496978,4	MCF-7	breast:
5	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
6	chr6:11489653..11491693-chr6:11494680..11496394,2	MCF-7	breast:
7	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
8	chr6:11230707..11237186-chr6:11493072..11498269,11	MCF-7	breast:
9	chr6:11142754..11146580-chr6:11494452..11498982,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1403137	1.00[AMR][1000 genomes]
rs16871458	1.00[AMR][1000 genomes]
rs2103027	1.00[AMR][1000 genomes]
rs56205367	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721748	0.94[AFR][1000 genomes]
rs73721750	0.97[AFR][1000 genomes]
rs73721754	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7451490	1.00[AMR][1000 genomes]
rs7757865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689511	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11483800-11495000	Weak transcription	Pancreas	Pancrea
2	chr6:11486800-11496000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:11487000-11495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:11487400-11495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:11487400-11495800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:11491800-11495800	Weak transcription	Fetal Kidney	kidney
8	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
10	chr6:11492000-11498200	Enhancers	A549	lung
11	chr6:11492200-11497400	Enhancers	HepG2	liver
12	chr6:11492800-11496000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:11493000-11495000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:11493000-11499800	Weak transcription	NH-A	brain
15	chr6:11493200-11496000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:11493400-11495000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:11493400-11495000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:11493400-11496200	Weak transcription	Osteobl	bone
19	chr6:11493400-11497600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:11493400-11498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:11493600-11495000	Weak transcription	Placenta	Placenta
22	chr6:11493600-11495800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:11493600-11496400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:11493600-11496800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:11493800-11495000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:11494200-11496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:11494200-11498200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:11494400-11500600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:11494600-11496000	Enhancers	Lung	lung
30	chr6:11494600-11496000	Flanking Active TSS	GM12878-XiMat	blood
31	chr6:11494600-11496600	Enhancers	Fetal Heart	heart
32	chr6:11494600-11497200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:11494800-11495000	Enhancers	Spleen	Spleen
34	chr6:11494800-11495400	Enhancers	Right Atrium	heart
35	chr6:11494800-11495600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:11494800-11495800	Enhancers	Right Ventricle	heart
37	chr6:11494800-11496000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:11494800-11496400	Enhancers	Fetal Stomach	stomach
39	chr6:11494800-11496600	Enhancers	Cortex derived primary cultured neurospheres	brain

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