Variant report

Variant	rs9689511
Chromosome Location	chr6:11497707-11497708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
2	chr6:11230707..11237186-chr6:11493072..11498269,11	MCF-7	breast:
3	chr6:11143454..11145339-chr6:11495146..11498003,3	MCF-7	breast:
4	chr6:11142754..11146580-chr6:11494452..11498982,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6912815	0.94[AFR][1000 genomes]
rs73721742	0.88[AFR][1000 genomes]
rs73721745	0.94[AFR][1000 genomes]
rs73721746	0.94[AFR][1000 genomes]
rs73721748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721754	0.82[AFR][1000 genomes]
rs73721757	1.00[AMR][1000 genomes]
rs7757865	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11492000-11498200	Enhancers	A549	lung
2	chr6:11493000-11499800	Weak transcription	NH-A	brain
3	chr6:11493400-11498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:11494200-11498200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:11494400-11500600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:11496400-11497800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:11496400-11498600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:11496600-11499800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:11496600-11500000	Weak transcription	Osteobl	bone
10	chr6:11496600-11500200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:11497000-11497800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr6:11497000-11498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:11497000-11498000	Weak transcription	HMEC	breast
14	chr6:11497000-11498400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:11497000-11499800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:11497000-11500000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:11497000-11500200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:11497200-11498200	Weak transcription	Placenta	Placenta
19	chr6:11497200-11499200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:11497200-11500000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:11497200-11500000	Weak transcription	NHEK	skin
22	chr6:11497400-11498400	Enhancers	GM12878-XiMat	blood
23	chr6:11497400-11500000	Weak transcription	HepG2	liver
24	chr6:11497600-11497800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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