Variant report

Variant	rs16871785
Chromosome Location	chr8:105765178-105765179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16871570	1.00[AMR][1000 genomes]
rs16871574	1.00[AMR][1000 genomes]
rs16871659	1.00[AMR][1000 genomes]
rs16871756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4492340	1.00[AMR][1000 genomes]
rs58805155	1.00[AMR][1000 genomes]
rs6468936	1.00[AMR][1000 genomes]
rs6468938	1.00[AMR][1000 genomes]
rs6468942	1.00[AMR][1000 genomes]
rs6982444	1.00[AMR][1000 genomes]
rs6982693	1.00[AMR][1000 genomes]
rs6984085	1.00[AMR][1000 genomes]
rs6984951	1.00[AMR][1000 genomes]
rs6986610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992140	1.00[AMR][1000 genomes]
rs6998138	1.00[AMR][1000 genomes]
rs7000469	1.00[AMR][1000 genomes]
rs7005906	1.00[AMR][1000 genomes]
rs7009354	1.00[AMR][1000 genomes]
rs7010874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813838	1.00[AMR][1000 genomes]
rs7814284	1.00[AMR][1000 genomes]
rs7815196	1.00[AMR][1000 genomes]
rs7817448	1.00[AMR][1000 genomes]
rs7819632	1.00[AMR][1000 genomes]
rs7820450	1.00[AMR][1000 genomes]
rs7821042	1.00[AMR][1000 genomes]
rs7832455	1.00[AMR][1000 genomes]
rs7836110	1.00[AMR][1000 genomes]
rs7837072	1.00[AMR][1000 genomes]
rs7837076	1.00[AMR][1000 genomes]
rs7838122	1.00[AMR][1000 genomes]
rs7845240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv465754	chr8:105764528-105878832	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
7	nsv611836	chr8:105764528-105878832	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105760000-105766400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:105760600-105766600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:105764200-105765400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:105764400-105765200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:105764400-105765200	Enhancers	HMEC	breast
6	chr8:105764400-105765400	Enhancers	Osteobl	bone
7	chr8:105764600-105765200	Enhancers	NHDF-Ad	bronchial
8	chr8:105764600-105765400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:105764600-105765400	Enhancers	NH-A	brain
10	chr8:105764600-105765600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:105764800-105765400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:105764800-105765400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:105765000-105765200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:105765000-105766400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:105765000-105766400	Weak transcription	NHEK	skin

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