Variant report

Variant	rs6986610
Chromosome Location	chr8:105776886-105776887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105774699..105776981-chr8:105803740..105806359,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16871570	1.00[AMR][1000 genomes]
rs16871574	1.00[AMR][1000 genomes]
rs16871659	1.00[AMR][1000 genomes]
rs16871756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4492340	1.00[AMR][1000 genomes]
rs58805155	1.00[AMR][1000 genomes]
rs6468936	1.00[AMR][1000 genomes]
rs6468938	1.00[AMR][1000 genomes]
rs6468942	1.00[AMR][1000 genomes]
rs6982444	1.00[AMR][1000 genomes]
rs6982693	1.00[AMR][1000 genomes]
rs6984085	1.00[AMR][1000 genomes]
rs6984951	1.00[AMR][1000 genomes]
rs6992140	1.00[AMR][1000 genomes]
rs6998138	1.00[AMR][1000 genomes]
rs7000469	1.00[AMR][1000 genomes]
rs7005906	1.00[AMR][1000 genomes]
rs7009354	1.00[AMR][1000 genomes]
rs7010874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813838	1.00[AMR][1000 genomes]
rs7814284	1.00[AMR][1000 genomes]
rs7815196	1.00[AMR][1000 genomes]
rs7819632	1.00[AMR][1000 genomes]
rs7820450	1.00[AMR][1000 genomes]
rs7821042	1.00[AMR][1000 genomes]
rs7845240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv465754	chr8:105764528-105878832	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
7	nsv611836	chr8:105764528-105878832	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105776000-105777000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:105776200-105777000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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