Variant report

Variant	rs7845240
Chromosome Location	chr8:105710754-105710755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105698626..105703795-chr8:105706675..105713568,6	K562	blood:
2	chr8:105703897..105705992-chr8:105708267..105711110,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10505059	1.00[AMR][1000 genomes]
rs10505061	1.00[AMR][1000 genomes]
rs16871501	1.00[AMR][1000 genomes]
rs16871527	1.00[AMR][1000 genomes]
rs16871528	1.00[AMR][1000 genomes]
rs16871529	1.00[AMR][1000 genomes]
rs16871532	1.00[AMR][1000 genomes]
rs16871540	1.00[AMR][1000 genomes]
rs16871542	1.00[AMR][1000 genomes]
rs16871570	1.00[AMR][1000 genomes]
rs16871574	1.00[AMR][1000 genomes]
rs16871659	1.00[AMR][1000 genomes]
rs16871756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478539	1.00[AMR][1000 genomes]
rs4492340	1.00[AMR][1000 genomes]
rs58805155	1.00[AMR][1000 genomes]
rs6468931	1.00[AMR][1000 genomes]
rs6468936	1.00[AMR][1000 genomes]
rs6468938	1.00[AMR][1000 genomes]
rs6468942	1.00[AMR][1000 genomes]
rs6981436	1.00[AMR][1000 genomes]
rs6981448	1.00[AMR][1000 genomes]
rs6982444	1.00[AMR][1000 genomes]
rs6982693	1.00[AMR][1000 genomes]
rs6984085	1.00[AMR][1000 genomes]
rs6984951	1.00[AMR][1000 genomes]
rs6986610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992140	1.00[AMR][1000 genomes]
rs6998138	1.00[AMR][1000 genomes]
rs7000469	1.00[AMR][1000 genomes]
rs7005906	1.00[AMR][1000 genomes]
rs7009354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7009946	1.00[AMR][1000 genomes]
rs7010175	1.00[AMR][1000 genomes]
rs7010874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813227	1.00[AMR][1000 genomes]
rs7813838	1.00[AMR][1000 genomes]
rs7814211	1.00[AMR][1000 genomes]
rs7814284	1.00[AMR][1000 genomes]
rs7815196	1.00[AMR][1000 genomes]
rs7817448	1.00[AMR][1000 genomes]
rs7817730	1.00[AMR][1000 genomes]
rs7819632	1.00[AMR][1000 genomes]
rs7819974	1.00[AMR][1000 genomes]
rs7820450	1.00[AMR][1000 genomes]
rs7820552	1.00[AMR][1000 genomes]
rs7821042	1.00[AMR][1000 genomes]
rs7829983	1.00[AMR][1000 genomes]
rs7832076	1.00[AMR][1000 genomes]
rs7832455	1.00[AMR][1000 genomes]
rs7836110	1.00[AMR][1000 genomes]
rs7837072	1.00[AMR][1000 genomes]
rs7837076	1.00[AMR][1000 genomes]
rs7838122	1.00[AMR][1000 genomes]
rs7839019	1.00[AMR][1000 genomes]
rs7841549	1.00[AMR][1000 genomes]
rs7842135	1.00[AMR][1000 genomes]
rs9694695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105703200-105713400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:105705000-105715800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links