Variant report

Variant	rs16872536
Chromosome Location	chr5:74678485-74678486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10515195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10942736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10942737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12055331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872521	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872526	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1909720	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs1988728	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap]
rs2303152	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3827608	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857388	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3895886	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3925086	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4629571	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805408	0.91[ASN][1000 genomes]
rs56082155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56361267	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56981407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5744566	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs5744567	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs5744572	0.87[ASN][1000 genomes]
rs5744578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs5744591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs5744594	0.82[AFR][1000 genomes]
rs5744612	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap]
rs5744661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs57566899	0.95[ASN][1000 genomes]
rs58780510	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59367133	0.91[ASN][1000 genomes]
rs60298841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60854109	0.82[AFR][1000 genomes]
rs61001560	0.95[ASN][1000 genomes]
rs61080643	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61175242	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6878576	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs73763057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763093	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763097	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763098	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73763099	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73763101	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763102	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764903	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764904	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73764905	0.95[ASN][1000 genomes]
rs73764909	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73764910	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73764914	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73764915	0.87[ASN][1000 genomes]
rs73764920	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73764921	0.91[ASN][1000 genomes]
rs73764922	0.91[ASN][1000 genomes]
rs73764925	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9791146	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882192	chr5:74641707-74707762	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74656400-74687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74656400-74725600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:74656600-74694800	Weak transcription	Brain Angular Gyrus	brain
4	chr5:74656800-74731400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:74657800-74708000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:74659800-74684800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:74659800-74720600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:74660000-74722800	Weak transcription	Fetal Heart	heart
9	chr5:74660200-74707800	Weak transcription	Stomach Mucosa	stomach
10	chr5:74661800-74683600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:74665000-74703000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr5:74667000-74723200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:74667200-74688200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:74667200-74693600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:74667600-74687600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:74668000-74688400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:74668200-74686200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:74668400-74685600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:74668600-74681600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:74668600-74686800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:74668600-74687200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:74668600-74687600	Strong transcription	Adipose Nuclei	Adipose
23	chr5:74668600-74687600	Strong transcription	Fetal Lung	lung
24	chr5:74668600-74691200	Strong transcription	Liver	Liver
25	chr5:74668800-74685800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr5:74669400-74678600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:74669600-74681400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:74670800-74709400	Weak transcription	Pancreas	Pancrea
29	chr5:74670800-74720600	Weak transcription	Right Ventricle	heart
30	chr5:74670800-74731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:74671000-74686000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:74671000-74722800	Weak transcription	Hela-S3	cervix
33	chr5:74671600-74686000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr5:74671800-74684200	Strong transcription	Primary hematopoietic stem cells	blood
35	chr5:74672000-74682000	Strong transcription	Primary B cells from cord blood	blood
36	chr5:74672200-74687000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr5:74673000-74682400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr5:74673200-74682600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr5:74673200-74685200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:74673200-74685800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr5:74673200-74685800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:74673200-74685800	Strong transcription	Dnd41	blood
43	chr5:74673200-74686000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:74673400-74682200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:74673400-74685800	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr5:74673400-74686000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:74673600-74681400	Strong transcription	Placenta	Placenta
48	chr5:74673600-74681600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr5:74674000-74678800	Strong transcription	Brain Germinal Matrix	brain
50	chr5:74674400-74688000	Weak transcription	NHEK	skin

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