Variant report

Variant	rs3925086
Chromosome Location	chr5:74755772-74755773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74753229..74754839-chr5:74755148..74758107,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10515195	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10942736	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10942737	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12055331	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16872521	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16872528	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16872536	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16872555	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872556	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872589	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872635	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872639	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1909720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1988728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303152	0.91[ASN][1000 genomes]
rs3827608	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3857388	0.83[ASN][1000 genomes]
rs3895886	0.83[ASN][1000 genomes]
rs4512110	0.81[EUR][1000 genomes]
rs4629571	0.95[ASN][1000 genomes]
rs55705647	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55805408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56082155	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56361267	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56981407	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs5744566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744567	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744572	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744612	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744658	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5744661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744681	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744722	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57566899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58780510	0.84[EUR][1000 genomes]
rs58789089	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59367133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60298841	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60854109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61001560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61080643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61164763	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61175242	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61678717	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6878576	0.83[ASN][1000 genomes]
rs73763057	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73763093	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73763094	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763097	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73763098	0.84[EUR][1000 genomes]
rs73763099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73763101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73764905	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764909	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764915	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73764920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764921	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73764928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73764930	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73764931	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73764932	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs767677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs963004	0.92[EUR][1000 genomes]
rs9791146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv882198	chr5:74736065-74896798	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74674400-74761400	Weak transcription	Esophagus	oesophagus
2	chr5:74706200-74756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:74709600-74760200	Weak transcription	Gastric	stomach
4	chr5:74730400-74757400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:74731800-74757400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:74732000-74756800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:74732000-74760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:74732000-74787400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:74738600-74756600	Weak transcription	Fetal Kidney	kidney
10	chr5:74739600-74756200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:74740000-74761600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:74741200-74760200	Weak transcription	Left Ventricle	heart
13	chr5:74742400-74794200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:74742600-74764200	Weak transcription	HSMM	muscle
15	chr5:74743000-74757000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:74743000-74760000	Weak transcription	Lung	lung
17	chr5:74743000-74761400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:74743000-74761600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:74743000-74763400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:74743000-74764400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:74743200-74756200	Weak transcription	A549	lung
22	chr5:74743200-74758000	Weak transcription	Fetal Stomach	stomach
23	chr5:74743200-74764200	Weak transcription	Aorta	Aorta
24	chr5:74743800-74761400	Weak transcription	Fetal Thymus	thymus
25	chr5:74743800-74761400	Weak transcription	Thymus	Thymus
26	chr5:74743800-74761800	Weak transcription	K562	blood
27	chr5:74744000-74759600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr5:74744600-74756200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:74746200-74760000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:74746200-74760200	Weak transcription	Spleen	Spleen
31	chr5:74746200-74761000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr5:74746400-74759600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:74746600-74759400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr5:74746800-74756400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:74746800-74756400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:74746800-74756800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:74747200-74756400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:74747200-74761200	Weak transcription	Primary T cells from cord blood	blood
39	chr5:74747600-74756600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:74748200-74756400	Weak transcription	Brain Hippocampus Middle	brain
41	chr5:74748200-74756400	Weak transcription	Fetal Brain Female	brain
42	chr5:74748200-74761400	Weak transcription	Right Ventricle	heart
43	chr5:74748400-74759600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:74748600-74770400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr5:74748800-74761200	Weak transcription	Fetal Heart	heart
46	chr5:74750600-74763600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:74750800-74756600	Weak transcription	Primary B cells from cord blood	blood
48	chr5:74750800-74757000	Weak transcription	NHLF	lung
49	chr5:74751000-74756400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr5:74751000-74758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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