Variant report

Variant	rs73763102
Chromosome Location	chr5:74733896-74733897
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74728841..74731298-chr5:74732916..74734821,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10515195	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10942736	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10942737	0.91[ASN][1000 genomes]
rs12055331	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16872521	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872526	0.85[EUR][1000 genomes]
rs16872528	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872536	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872555	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872556	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872589	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872635	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872639	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1988728	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303152	0.91[ASN][1000 genomes]
rs3827608	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3857388	0.83[ASN][1000 genomes]
rs3895886	0.83[ASN][1000 genomes]
rs3925086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629571	0.95[ASN][1000 genomes]
rs55705647	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55805408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56082155	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56361267	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56981407	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5744566	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744567	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744572	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5744578	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744587	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744591	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744612	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744658	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5744661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5744722	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57566899	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58780510	0.89[EUR][1000 genomes]
rs58789089	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59367133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60298841	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60854109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61001560	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61080643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61164763	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61175242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61678717	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6878576	0.83[ASN][1000 genomes]
rs73763057	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763093	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763094	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73763097	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73763098	0.89[EUR][1000 genomes]
rs73763099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73763101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764903	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764904	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73764905	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764909	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764915	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73764920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764921	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73764925	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73764928	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73764930	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73764931	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73764932	0.95[AMR][1000 genomes]
rs767677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs963004	0.86[EUR][1000 genomes]
rs9791146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74674400-74761400	Weak transcription	Esophagus	oesophagus
2	chr5:74677600-74734200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:74706200-74756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:74708400-74746000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:74709600-74760200	Weak transcription	Gastric	stomach
6	chr5:74713200-74753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:74718800-74742200	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:74721400-74734000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:74721400-74742600	Weak transcription	Thymus	Thymus
10	chr5:74721600-74736000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:74721600-74741400	Weak transcription	Fetal Lung	lung
12	chr5:74721600-74742600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:74721800-74734400	Weak transcription	HMEC	breast
14	chr5:74721800-74741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr5:74721800-74742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:74721800-74749600	Weak transcription	Adipose Nuclei	Adipose
17	chr5:74722000-74737400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:74722200-74737200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:74722200-74749800	Weak transcription	Liver	Liver
20	chr5:74722600-74738000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:74722600-74742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:74722800-74735200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:74722800-74737400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:74723000-74741400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr5:74723200-74734200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr5:74723200-74738000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:74725600-74741400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr5:74729800-74741400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:74730200-74734200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:74730400-74757400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr5:74731200-74734200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:74731200-74738400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr5:74731800-74734000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr5:74731800-74737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:74731800-74737400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr5:74731800-74741400	Weak transcription	Aorta	Aorta
37	chr5:74731800-74741600	Weak transcription	HSMMtube	muscle
38	chr5:74731800-74742400	Weak transcription	Ovary	ovary
39	chr5:74731800-74757400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:74732000-74742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:74732000-74742600	Weak transcription	Lung	lung
42	chr5:74732000-74756800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:74732000-74760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:74732000-74787400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:74732200-74735000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:74732200-74736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:74732400-74734200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr5:74733000-74734800	Weak transcription	Primary B cells from cord blood	blood
49	chr5:74733000-74734800	Weak transcription	Fetal Stomach	stomach
50	chr5:74733000-74735400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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