Variant report

Variant	rs16873739
Chromosome Location	chr7:129544266-129544267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129543014..129545443-chr7:129549308..129551080,2	K562	blood:
2	chr7:129418574..129420391-chr7:129542627..129545526,2	K562	blood:
3	chr7:129542833..129545187-chr7:129548253..129550417,2	MCF-7	breast:
4	chr7:129536867..129540037-chr7:129542544..129546019,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2280680	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807118	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3807119	0.88[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3817530	0.88[CHB][hapmap];0.83[GIH][hapmap]
rs4728179	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4731633	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4731634	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4731636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62491490	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62491495	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62491500	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62491519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62491520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62491531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62491534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62491535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62491538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62491540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62491541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129505600-129545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:129513200-129548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:129516200-129584400	Weak transcription	Fetal Brain Male	brain
4	chr7:129518000-129545200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:129518200-129557200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:129518200-129564600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:129519400-129546400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:129519600-129546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:129520800-129545600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:129520800-129551200	Weak transcription	Placenta	Placenta
11	chr7:129522000-129548200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:129522600-129544600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:129522600-129547800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:129522600-129548400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:129522600-129548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:129526000-129548200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:129529800-129544400	Weak transcription	Right Atrium	heart
18	chr7:129529800-129545000	Weak transcription	Fetal Kidney	kidney
19	chr7:129529800-129545200	Weak transcription	Brain Anterior Caudate	brain
20	chr7:129529800-129546200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:129529800-129553400	Weak transcription	Brain Germinal Matrix	brain
22	chr7:129530000-129587600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:129531600-129548400	Weak transcription	Fetal Brain Female	brain
24	chr7:129535400-129546800	Weak transcription	Colonic Mucosa	Colon
25	chr7:129536200-129548000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:129537000-129546600	Weak transcription	A549	lung
27	chr7:129537000-129554800	Weak transcription	NHDF-Ad	bronchial
28	chr7:129537200-129552000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:129538600-129546200	Weak transcription	HUVEC	blood vessel
30	chr7:129539000-129546600	Weak transcription	NH-A	brain
31	chr7:129539200-129546200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:129539200-129546800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:129539400-129545000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:129539400-129545400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:129539600-129545200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:129539600-129554800	Weak transcription	Dnd41	blood
37	chr7:129540400-129545400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:129541000-129544800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:129541000-129544800	Strong transcription	Fetal Stomach	stomach
40	chr7:129541000-129546200	Strong transcription	Fetal Intestine Small	intestine
41	chr7:129541000-129546800	Strong transcription	Fetal Thymus	thymus
42	chr7:129541000-129547400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:129541000-129552400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:129541200-129545200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:129541200-129546200	Enhancers	Psoas Muscle	Psoas
46	chr7:129541200-129546600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr7:129541200-129546600	Weak transcription	Fetal Lung	lung
48	chr7:129541200-129548000	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr7:129541400-129545400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:129541400-129546000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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