Variant report

Variant	rs16874019
Chromosome Location	chr6:45916177-45916178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16874013	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874029	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179992	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943199	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35376655	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35570290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3798264	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798265	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6916183	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6921488	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71566554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45898600-45916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45903000-45917200	Strong transcription	Fetal Intestine Large	intestine
4	chr6:45907000-45916600	Weak transcription	Pancreas	Pancrea
5	chr6:45907400-45917600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:45907800-45916400	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr6:45908000-45918600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:45908200-45918200	Weak transcription	Colonic Mucosa	Colon
9	chr6:45911000-45919200	Weak transcription	Small Intestine	intestine
10	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:45911200-45918000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:45911400-45919000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:45912400-45917200	Genic enhancers	Left Ventricle	heart
14	chr6:45912600-45916600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
17	chr6:45913400-45919000	Strong transcription	Fetal Intestine Small	intestine
18	chr6:45913800-45920000	Enhancers	Placenta	Placenta
19	chr6:45914200-45916600	Weak transcription	Fetal Kidney	kidney
20	chr6:45914200-45916600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:45914200-45919200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:45914400-45917200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:45914400-45917200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:45914600-45916200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:45914600-45916800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:45914600-45918800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:45914600-45919400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:45915000-45916600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:45915000-45917000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:45915000-45919200	Weak transcription	Lung	lung
31	chr6:45915200-45916600	Weak transcription	Psoas Muscle	Psoas
32	chr6:45915200-45916600	Weak transcription	Hela-S3	cervix
33	chr6:45915200-45919000	Weak transcription	Right Atrium	heart
34	chr6:45915400-45916800	Strong transcription	Right Ventricle	heart
35	chr6:45915400-45919000	Weak transcription	Fetal Heart	heart
36	chr6:45915800-45917400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr6:45915800-45918800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:45915800-45919800	Weak transcription	Duodenum Mucosa	Duodenum

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