Variant report

Variant	rs3798265
Chromosome Location	chr6:45916448-45916449
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16874013	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs16874019	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16874029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs3798264	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs57511523	1.00[AFR][1000 genomes]
rs58769510	1.00[AFR][1000 genomes]
rs58857205	1.00[AFR][1000 genomes]
rs59920294	1.00[AFR][1000 genomes]
rs60052675	1.00[AFR][1000 genomes]
rs60222305	1.00[AFR][1000 genomes]
rs60379910	1.00[AFR][1000 genomes]
rs61346854	1.00[AFR][1000 genomes]
rs6913874	1.00[AFR][1000 genomes]
rs6914060	1.00[AFR][1000 genomes]
rs6916183	0.81[CHD][hapmap]
rs6921488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs6928137	1.00[AFR][1000 genomes]
rs6940149	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45898600-45916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45903000-45917200	Strong transcription	Fetal Intestine Large	intestine
4	chr6:45907000-45916600	Weak transcription	Pancreas	Pancrea
5	chr6:45907400-45917600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:45908000-45918600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45908200-45918200	Weak transcription	Colonic Mucosa	Colon
8	chr6:45911000-45919200	Weak transcription	Small Intestine	intestine
9	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:45911200-45918000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:45911400-45919000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:45912400-45917200	Genic enhancers	Left Ventricle	heart
13	chr6:45912600-45916600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
16	chr6:45913400-45919000	Strong transcription	Fetal Intestine Small	intestine
17	chr6:45913800-45920000	Enhancers	Placenta	Placenta
18	chr6:45914200-45916600	Weak transcription	Fetal Kidney	kidney
19	chr6:45914200-45916600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:45914200-45919200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:45914400-45917200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:45914400-45917200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:45914600-45916800	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:45914600-45918800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:45914600-45919400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:45915000-45916600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:45915000-45917000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:45915000-45919200	Weak transcription	Lung	lung
29	chr6:45915200-45916600	Weak transcription	Psoas Muscle	Psoas
30	chr6:45915200-45916600	Weak transcription	Hela-S3	cervix
31	chr6:45915200-45919000	Weak transcription	Right Atrium	heart
32	chr6:45915400-45916800	Strong transcription	Right Ventricle	heart
33	chr6:45915400-45919000	Weak transcription	Fetal Heart	heart
34	chr6:45915800-45917400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr6:45915800-45918800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:45915800-45919800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:45916200-45919400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:45916400-45916800	Weak transcription	Rectal Mucosa Donor 31	rectum

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