Variant report

Variant	rs6921488
Chromosome Location	chr6:45925171-45925172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16874013	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874019	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179992	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943199	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35376655	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35570290	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777562	1.00[MEX][hapmap]
rs3798264	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3798265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs6916183	0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71566554	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
2	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45919600-45928000	Weak transcription	Adipose Nuclei	Adipose
4	chr6:45920000-45927200	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:45920000-45927200	Weak transcription	Placenta	Placenta
6	chr6:45920000-45928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
8	chr6:45920200-45926600	Weak transcription	Fetal Lung	lung
9	chr6:45921200-45928200	Weak transcription	Lung	lung
10	chr6:45921400-45926800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:45922400-45925800	Enhancers	Psoas Muscle	Psoas
12	chr6:45923000-45925400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:45923200-45925600	Weak transcription	Right Atrium	heart
14	chr6:45923200-45927400	Weak transcription	Fetal Kidney	kidney
15	chr6:45923200-45929200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:45923200-45931200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:45923400-45925200	Weak transcription	Fetal Heart	heart
18	chr6:45923800-45925200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:45923800-45925600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:45924200-45928200	Weak transcription	Small Intestine	intestine
21	chr6:45924400-45931000	Weak transcription	Fetal Intestine Small	intestine
22	chr6:45924600-45932400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:45924600-45934400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:45924800-45925200	Weak transcription	Left Ventricle	heart
25	chr6:45924800-45925600	Weak transcription	Right Ventricle	heart

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