Variant report

Variant	rs60222305
Chromosome Location	chr6:45899059-45899060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3798265	1.00[AFR][1000 genomes]
rs57511523	1.00[AFR][1000 genomes]
rs58769510	1.00[AFR][1000 genomes]
rs58857205	1.00[AFR][1000 genomes]
rs59920294	1.00[AFR][1000 genomes]
rs60052675	1.00[AFR][1000 genomes]
rs60379910	1.00[AFR][1000 genomes]
rs61346854	1.00[AFR][1000 genomes]
rs6913874	1.00[AFR][1000 genomes]
rs6914060	1.00[AFR][1000 genomes]
rs6928137	1.00[AFR][1000 genomes]
rs6940149	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
3	chr6:45890600-45901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:45895400-45910800	Weak transcription	Placenta	Placenta
5	chr6:45896200-45901400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:45896400-45899200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:45897200-45899200	Enhancers	Fetal Lung	lung
8	chr6:45897400-45899200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:45897400-45899200	Enhancers	Right Ventricle	heart
10	chr6:45897400-45899400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:45897800-45901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:45898000-45899200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:45898200-45901600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:45898200-45904400	Weak transcription	Spleen	Spleen
15	chr6:45898400-45899200	Genic enhancers	Fetal Intestine Small	intestine
16	chr6:45898400-45899200	Enhancers	Fetal Kidney	kidney
17	chr6:45898400-45899200	Enhancers	Hela-S3	cervix
18	chr6:45898600-45899200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:45898600-45899600	Weak transcription	Left Ventricle	heart
20	chr6:45898600-45901200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:45898600-45901400	Weak transcription	Osteobl	bone
22	chr6:45898600-45914600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:45898600-45916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:45898800-45899200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:45898800-45900400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:45898800-45903400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:45898800-45904200	Weak transcription	Colonic Mucosa	Colon
28	chr6:45898800-45911000	Weak transcription	Adipose Nuclei	Adipose
29	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:45899000-45900600	Weak transcription	Fetal Intestine Large	intestine
31	chr6:45899000-45910600	Weak transcription	Fetal Heart	heart

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