Variant report

Variant	rs61346854
Chromosome Location	chr6:45929241-45929242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3798265	1.00[AFR][1000 genomes]
rs57511523	1.00[AFR][1000 genomes]
rs58769510	1.00[AFR][1000 genomes]
rs58857205	1.00[AFR][1000 genomes]
rs59920294	1.00[AFR][1000 genomes]
rs60052675	1.00[AFR][1000 genomes]
rs60222305	1.00[AFR][1000 genomes]
rs60379910	1.00[AFR][1000 genomes]
rs6913874	1.00[AFR][1000 genomes]
rs6914060	1.00[AFR][1000 genomes]
rs6928137	1.00[AFR][1000 genomes]
rs6940149	1.00[AFR][1000 genomes]
rs73738317	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
3	chr6:45923200-45931200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:45924400-45931000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:45924600-45932400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:45924600-45934400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:45926800-45935000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:45927200-45929600	Enhancers	Placenta	Placenta
9	chr6:45927800-45930600	Enhancers	Fetal Heart	heart
10	chr6:45927800-45932800	Weak transcription	NH-A	brain
11	chr6:45927800-45933000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:45928000-45933000	Weak transcription	HMEC	breast
13	chr6:45928200-45936400	Weak transcription	Fetal Kidney	kidney
14	chr6:45928400-45929600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:45928400-45934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:45928600-45929400	Weak transcription	Right Atrium	heart
17	chr6:45928600-45930400	Weak transcription	Left Ventricle	heart
18	chr6:45928600-45931800	Weak transcription	Small Intestine	intestine
19	chr6:45928600-45933600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:45928600-45934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:45928600-45934200	Weak transcription	Lung	lung
22	chr6:45928600-45934200	Weak transcription	Right Ventricle	heart
23	chr6:45928800-45930000	Weak transcription	Psoas Muscle	Psoas
24	chr6:45929200-45930400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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