Variant report

Variant	rs58769510
Chromosome Location	chr6:45914890-45914891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3798265	1.00[AFR][1000 genomes]
rs57511523	1.00[AFR][1000 genomes]
rs58857205	1.00[AFR][1000 genomes]
rs59920294	1.00[AFR][1000 genomes]
rs60052675	1.00[AFR][1000 genomes]
rs60222305	1.00[AFR][1000 genomes]
rs60379910	1.00[AFR][1000 genomes]
rs61346854	1.00[AFR][1000 genomes]
rs6913874	1.00[AFR][1000 genomes]
rs6914060	1.00[AFR][1000 genomes]
rs6928137	1.00[AFR][1000 genomes]
rs6940149	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv517891	chr6:45899823-45915088	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45898600-45916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45903000-45917200	Strong transcription	Fetal Intestine Large	intestine
4	chr6:45907000-45916600	Weak transcription	Pancreas	Pancrea
5	chr6:45907400-45917600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:45907800-45916400	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr6:45908000-45918600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:45908200-45918200	Weak transcription	Colonic Mucosa	Colon
9	chr6:45910600-45915400	Enhancers	Fetal Heart	heart
10	chr6:45911000-45919200	Weak transcription	Small Intestine	intestine
11	chr6:45911000-45923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:45911200-45918000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:45911400-45919000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:45912400-45917200	Genic enhancers	Left Ventricle	heart
15	chr6:45912600-45915400	Genic enhancers	Right Ventricle	heart
16	chr6:45912600-45916600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:45912600-45923000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:45912800-45928400	Weak transcription	Spleen	Spleen
19	chr6:45913400-45915000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:45913400-45919000	Strong transcription	Fetal Intestine Small	intestine
21	chr6:45913800-45915000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:45913800-45915000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:45913800-45915200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:45913800-45915200	Enhancers	Right Atrium	heart
25	chr6:45913800-45920000	Enhancers	Placenta	Placenta
26	chr6:45914000-45915000	Enhancers	NHLF	lung
27	chr6:45914200-45915000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:45914200-45915000	Enhancers	Lung	lung
29	chr6:45914200-45916600	Weak transcription	Fetal Kidney	kidney
30	chr6:45914200-45916600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:45914200-45919200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:45914400-45917200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:45914400-45917200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:45914600-45915000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:45914600-45915000	Weak transcription	Psoas Muscle	Psoas
36	chr6:45914600-45915200	Enhancers	Hela-S3	cervix
37	chr6:45914600-45915200	Enhancers	HSMM	muscle
38	chr6:45914600-45915800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr6:45914600-45915800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:45914600-45916200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:45914600-45916800	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:45914600-45918800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:45914600-45919400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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