Variant report

Variant	rs16874129
Chromosome Location	chr7:26597088-26597089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26592279..26596183-chr7:26596578..26600236,5	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12154908	1.00[ASN][1000 genomes]
rs12700747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700750	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700751	1.00[ASN][1000 genomes]
rs13226226	0.94[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232483	0.94[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153862	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs17285297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17357184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17357205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17357240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014867	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107997	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708490	1.00[ASN][1000 genomes]
rs34100461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349657	0.92[EUR][1000 genomes]
rs34362204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34396699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34577165	0.97[EUR][1000 genomes]
rs34655544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34714573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35742990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35757731	0.94[EUR][1000 genomes]
rs71521772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735597	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768715	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
2	chr7:26591600-26600000	Weak transcription	Hela-S3	cervix
3	chr7:26593600-26607000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:26596400-26602400	Weak transcription	Lung	lung
5	chr7:26596600-26599600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:26596600-26600400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links