Variant report

Variant	rs34349657
Chromosome Location	chr7:26591553-26591554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26584457..26586274-chr7:26591552..26594480,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-1	chr7:26591515-26591829	ENSG00000233760
2	lnc-C7orf71-1	chr7:26591458-26591829	ENSG00000233760
3	lnc-C7orf71-1	chr7:26591441-26591829	ENSG00000233760

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10240247	0.89[ASN][1000 genomes]
rs10253181	0.89[ASN][1000 genomes]
rs12154305	0.89[ASN][1000 genomes]
rs12534452	0.82[ASN][1000 genomes]
rs12700747	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13226226	0.91[EUR][1000 genomes]
rs13232483	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16874129	0.92[EUR][1000 genomes]
rs17153818	0.82[ASN][1000 genomes]
rs17153822	0.82[ASN][1000 genomes]
rs17153838	0.82[ASN][1000 genomes]
rs17153862	0.92[EUR][1000 genomes]
rs17285297	0.92[EUR][1000 genomes]
rs17357184	0.92[EUR][1000 genomes]
rs17357205	0.92[EUR][1000 genomes]
rs17357240	0.92[EUR][1000 genomes]
rs34100461	0.92[EUR][1000 genomes]
rs34362204	0.92[EUR][1000 genomes]
rs34396699	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34577165	0.92[EUR][1000 genomes]
rs34655544	0.92[EUR][1000 genomes]
rs34714573	0.92[EUR][1000 genomes]
rs34934672	0.92[EUR][1000 genomes]
rs35412328	0.82[ASN][1000 genomes]
rs35530013	0.82[ASN][1000 genomes]
rs35742990	0.92[EUR][1000 genomes]
rs35757731	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4601210	0.82[ASN][1000 genomes]
rs4604331	0.82[ASN][1000 genomes]
rs55639061	0.89[ASN][1000 genomes]
rs55644320	0.89[ASN][1000 genomes]
rs55687119	0.89[ASN][1000 genomes]
rs55715725	0.89[ASN][1000 genomes]
rs55779830	0.89[ASN][1000 genomes]
rs55871610	0.89[ASN][1000 genomes]
rs56157887	0.89[ASN][1000 genomes]
rs56325361	0.89[ASN][1000 genomes]
rs56408177	0.89[ASN][1000 genomes]
rs6953881	0.89[ASN][1000 genomes]
rs6970244	0.89[ASN][1000 genomes]
rs6974982	0.89[ASN][1000 genomes]
rs71521772	0.92[EUR][1000 genomes]
rs735597	0.94[EUR][1000 genomes]
rs7457859	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26578800-26591600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:26582400-26592200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26586800-26595600	Weak transcription	Fetal Kidney	kidney
4	chr7:26588000-26595000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:26589000-26595800	Weak transcription	Lung	lung
7	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
8	chr7:26589800-26591600	Enhancers	Hela-S3	cervix
9	chr7:26589800-26594400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:26589800-26595800	Weak transcription	Gastric	stomach
11	chr7:26590600-26593000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:26590800-26592800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:26590800-26595800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:26591400-26592000	Enhancers	Spleen	Spleen

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