Variant report

Variant	rs56325361
Chromosome Location	chr7:26553322-26553323
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10240247	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253181	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154305	1.00[ASN][1000 genomes]
rs34349657	0.89[ASN][1000 genomes]
rs55639061	1.00[ASN][1000 genomes]
rs55644320	1.00[ASN][1000 genomes]
rs55687119	1.00[ASN][1000 genomes]
rs55715725	1.00[ASN][1000 genomes]
rs55779830	1.00[ASN][1000 genomes]
rs55871610	1.00[ASN][1000 genomes]
rs56157887	1.00[ASN][1000 genomes]
rs56408177	1.00[ASN][1000 genomes]
rs6953881	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970244	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974982	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26549000-26554400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:26551800-26554200	Enhancers	K562	blood
3	chr7:26552200-26554800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:26552800-26553800	Weak transcription	Pancreas	Pancrea
5	chr7:26552800-26556200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:26553200-26555200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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