Variant report

Variant	rs6970244
Chromosome Location	chr7:26564108-26564109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26561471..26564248-chr7:26575728..26578008,2	MCF-7	breast:
2	chr7:26403874..26406286-chr7:26561815..26564563,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10240247	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154305	1.00[ASN][1000 genomes]
rs12534452	1.00[CHB][hapmap]
rs17153818	1.00[CHB][hapmap]
rs17153822	1.00[CHB][hapmap]
rs17153830	1.00[CHB][hapmap]
rs17153838	1.00[CHB][hapmap]
rs34349657	0.89[ASN][1000 genomes]
rs4601210	1.00[CHB][hapmap]
rs4604331	1.00[CHB][hapmap]
rs55639061	1.00[ASN][1000 genomes]
rs55644320	1.00[ASN][1000 genomes]
rs55687119	1.00[ASN][1000 genomes]
rs55715725	1.00[ASN][1000 genomes]
rs55779830	1.00[ASN][1000 genomes]
rs55871610	1.00[ASN][1000 genomes]
rs56157887	1.00[ASN][1000 genomes]
rs56325361	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408177	1.00[ASN][1000 genomes]
rs6953881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974982	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457859	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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