Variant report

Variant	rs16878433
Chromosome Location	chr6:48919900-48919901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16878348	1.00[AMR][1000 genomes]
rs16878490	1.00[AMR][1000 genomes]
rs57029386	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60354442	1.00[AMR][1000 genomes]
rs61595977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481407	1.00[AMR][1000 genomes]
rs73481471	1.00[AMR][1000 genomes]
rs73481493	1.00[AMR][1000 genomes]
rs73483386	1.00[AMR][1000 genomes]
rs73487118	1.00[AMR][1000 genomes]
rs73487127	1.00[AMR][1000 genomes]
rs7765308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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